Go to file

chaopower c9f525b2bf 增加新抗原		2023-12-21 10:22:54 +08:00
codes	增加新抗原	2023-12-21 10:22:54 +08:00
database	数据更新	2023-12-19 14:09:42 +08:00
wdl	增加新抗原	2023-12-21 10:22:54 +08:00
.gitignore	添加环境	2023-12-15 10:49:08 +08:00
README.md	调整call_mutation	2023-09-27 10:47:03 +08:00
pipeline.wdl	增加新抗原	2023-12-21 10:22:54 +08:00
soft_bash	bug	2023-12-15 13:25:10 +08:00

README.md

pipeline

run script example

export PATH=/dataseq/product/workflow/software/bin:$PATH

java17 -Dconfig.file=/home/zhangchao/project/pipeline/wdl/cromwell.examples.conf \
-jar /dataseq/product/workflow/software/cromwell-85.jar run  \
--inputs /home/zhangchao/project/pipeline/workflow/test/20230814.json \
/home/zhangchao/project/pipeline/workflow/pipeline.wdl

dot

womtool graph pipeline.wdl > other/pipeline.dot