pipeline/database/cnv.csv

14 KiB
Executable File

1GeneAlterationOncogenicMutation_EffectCitations
2CDK6AmplificationOncogenicGain-of-function4
3MCL1AmplificationOncogenicGain-of-function4
4PDGFRAAmplificationOncogenicGain-of-function4
5SRCAmplificationLikely OncogenicLikely Gain-of-function4
6FGFR4AmplificationOncogenicGain-of-function4
7ECSITAmplificationLikely OncogenicLikely Gain-of-function4
8EGFRAmplificationOncogenicGain-of-function4
9HRASAmplificationLikely OncogenicLikely Gain-of-function4
10ERCC2AmplificationInconclusiveInconclusive4
11ATP1A1AmplificationLikely OncogenicLikely Gain-of-function4
12UBR5AmplificationLikely OncogenicLikely Gain-of-function4
13PDGFRBAmplificationInconclusiveInconclusive4
14MYCAmplificationOncogenicGain-of-function4
15CDK4AmplificationOncogenicGain-of-function4
16RICTORAmplificationOncogenicGain-of-function4
17ALKAmplificationLikely OncogenicLikely Gain-of-function4
18FGFR2AmplificationLikely OncogenicLikely Gain-of-function4
19PHF19AmplificationLikely OncogenicLikely Gain-of-function4
20RAC1AmplificationLikely OncogenicGain-of-function4
21CARD11AmplificationLikely OncogenicLikely Gain-of-function4
22AXLAmplificationLikely OncogenicLikely Gain-of-function4
23FGFR1AmplificationOncogenicGain-of-function4
24PIK3R2AmplificationLikely OncogenicLikely Gain-of-function4
25KAT7AmplificationLikely OncogenicLikely Gain-of-function4
26GLI1AmplificationOncogenicGain-of-function4
27NRASAmplificationInconclusiveInconclusive4
28CXCR4AmplificationLikely OncogenicLikely Gain-of-function4
29PSMB2AmplificationLikely OncogenicLikely Gain-of-function4
30BRAFAmplificationOncogenicGain-of-function4
31FLT1AmplificationInconclusiveInconclusive4
32DNMT3BAmplificationLikely OncogenicLikely Gain-of-function4
33KDM5AAmplificationLikely OncogenicLikely Gain-of-function4
34ARAmplificationLikely OncogenicLikely Gain-of-function4
35MDM2AmplificationOncogenicGain-of-function4
36YES1AmplificationLikely OncogenicLikely Gain-of-function4
37FOXA1AmplificationLikely OncogenicLikely Gain-of-function4
38MERTKAmplificationLikely OncogenicLikely Gain-of-function4
39MAP2K1AmplificationInconclusiveInconclusive4
40MYCLAmplificationLikely OncogenicLikely Gain-of-function4
41PPM1DAmplificationLikely OncogenicLikely Gain-of-function4
42NKX2-1AmplificationOncogenicGain-of-function4
43MYCNAmplificationOncogenicGain-of-function4
44ERBB3AmplificationOncogenicGain-of-function4
45ETV1AmplificationOncogenicGain-of-function4
46SETD3AmplificationLikely OncogenicLikely Gain-of-function4
47ERBB2AmplificationOncogenicGain-of-function4
48ROS1AmplificationLikely OncogenicLikely Gain-of-function4
49AURKAAmplificationOncogenicGain-of-function4
50NTRK1AmplificationLikely OncogenicLikely Gain-of-function4
51ACKR3AmplificationLikely OncogenicLikely Gain-of-function4
52MDM4AmplificationOncogenicGain-of-function4
53GATA3AmplificationLikely OncogenicLikely Gain-of-function4
54BCL6AmplificationLikely OncogenicLikely Gain-of-function4
55JUNAmplificationOncogenicGain-of-function4
56RNASEH2AAmplificationLikely OncogenicLikely Gain-of-function4
57REV3LAmplificationLikely OncogenicLikely Gain-of-function4
58PAK1AmplificationOncogenicGain-of-function4
59CCND3AmplificationLikely OncogenicLikely Gain-of-function4
60FGF4AmplificationLikely OncogenicLikely Gain-of-function4
61PIK3CBAmplificationLikely OncogenicGain-of-function4
62GAB2AmplificationLikely OncogenicLikely Gain-of-function4
63KITAmplificationLikely OncogenicLikely Gain-of-function4
64RHOAAmplificationOncogenicGain-of-function4
65RAF1AmplificationOncogenicGain-of-function4
66CCND1AmplificationOncogenicGain-of-function4
67ESR1AmplificationInconclusiveInconclusive4
68BAALCAmplificationLikely OncogenicLikely Gain-of-function3
69ID1AmplificationLikely OncogenicLikely Gain-of-function4
70KDRAmplificationOncogenicGain-of-function4
71PIK3CAAmplificationLikely OncogenicLikely Gain-of-function4
72MEF2BAmplificationLikely OncogenicLikely Gain-of-function4
73JAK2AmplificationOncogenicGain-of-function4
74FGF3AmplificationLikely OncogenicLikely Gain-of-function4
75MAPK1AmplificationLikely OncogenicGain-of-function4
76CD274AmplificationLikely OncogenicLikely Gain-of-function4
77METAmplificationOncogenicGain-of-function4
78FUSAmplificationLikely OncogenicLikely Gain-of-function4
79FZR1AmplificationLikely OncogenicLikely Gain-of-function4
80YAP1AmplificationOncogenicGain-of-function4
81CCNE1AmplificationOncogenicGain-of-function4
82CRLF2AmplificationOncogenicGain-of-function4
83NSD3AmplificationInconclusiveInconclusive4
84VEGFAAmplificationLikely OncogenicGain-of-function4
85SMOAmplificationInconclusiveInconclusive4
86KRASAmplificationLikely OncogenicLikely Gain-of-function4
87ADHFE1AmplificationLikely OncogenicLikely Gain-of-function4
88IKBKEAmplificationLikely OncogenicLikely Gain-of-function4
89RHEBAmplificationLikely OncogenicLikely Gain-of-function4
90ALOX12BAmplificationLikely OncogenicLikely Gain-of-function4
91BCL2L1AmplificationLikely OncogenicLikely Gain-of-function4
92BRD4AmplificationLikely OncogenicGain-of-function4
93FGF19AmplificationLikely OncogenicLikely Gain-of-function4
94TOP1AmplificationLikely OncogenicLikely Gain-of-function4
95KMT2AAmplificationInconclusiveInconclusive4
96RUNX1AmplificationOncogenicGain-of-function4
97AGO2AmplificationLikely OncogenicLikely Gain-of-function4
98DDR2AmplificationLikely OncogenicLikely Gain-of-function4
99AKT1AmplificationLikely OncogenicLikely Gain-of-function4
100HMGA1AmplificationLikely OncogenicLikely Gain-of-function4
101TRIM27AmplificationLikely OncogenicLikely Gain-of-function4
102CYP19A1AmplificationLikely OncogenicLikely Gain-of-function4
103IRS2AmplificationLikely OncogenicLikely Gain-of-function4
104PAX5AmplificationLikely OncogenicLikely Gain-of-function4
105LGR5AmplificationLikely OncogenicLikely Gain-of-function4
106CDK8AmplificationLikely OncogenicLikely Gain-of-function4
107AKT2AmplificationLikely OncogenicLikely Gain-of-function4
108HMGA2AmplificationLikely OncogenicLikely Gain-of-function4
109CDK12AmplificationInconclusiveInconclusive4
110MITFAmplificationLikely OncogenicLikely Gain-of-function4
111PDCD1LG2AmplificationLikely OncogenicLikely Gain-of-function4
112EZH2AmplificationOncogenicGain-of-function4
113AKT3AmplificationOncogenicGain-of-function4
114TERTAmplificationLikely OncogenicLikely Gain-of-function4
115KDM5COverexpressionLikely OncogenicLikely Gain-of-function4
116AURKBOverexpressionLikely OncogenicLikely Gain-of-function4
117RHOAOverexpressionOncogenicGain-of-function4
118CCNE1OverexpressionOncogenicGain-of-function4
119EZH2OverexpressionOncogenicGain-of-function4
120MSH2DeletionLikely OncogenicLikely Loss-of-function4
121BBC3DeletionLikely OncogenicLikely Loss-of-function4
122EP300DeletionLikely OncogenicLikely Loss-of-function4
123CHTF8DeletionLikely OncogenicLikely Loss-of-function4
124ATRIPDeletionLikely OncogenicLikely Loss-of-function4
125BAP1DeletionLikely OncogenicLikely Loss-of-function4
126TGFBR1DeletionLikely OncogenicLikely Loss-of-function4
127MSH3DeletionLikely OncogenicLoss-of-function4
128DAXXDeletionOncogenicLoss-of-function4
129DUSP4DeletionInconclusiveInconclusive4
130FANCADeletionLikely OncogenicLikely Loss-of-function4
131ERRFI1DeletionLikely OncogenicLikely Loss-of-function4
132BRIP1DeletionLikely OncogenicLikely Loss-of-function4
133PTPRDDeletionOncogenicLoss-of-function4
134TGFBR2DeletionLikely OncogenicLikely Loss-of-function4
135CTCFDeletionLikely OncogenicLikely Loss-of-function4
136NF1DeletionLikely OncogenicLoss-of-function4
137FBXW7DeletionLikely OncogenicLikely Loss-of-function4
138RAD51BDeletionLikely OncogenicLikely Loss-of-function4
139ATMDeletionLikely OncogenicLikely Loss-of-function4
140MLH1DeletionLikely OncogenicLoss-of-function4
141BTG1DeletionLikely OncogenicLoss-of-function4
142RELNDeletionLikely OncogenicLikely Loss-of-function4
143NOTCH1DeletionLikely OncogenicLikely Gain-of-function4
144PIK3R1DeletionLikely OncogenicLikely Loss-of-function4
145XRCC2DeletionLikely NeutralLikely Loss-of-function4
146ERCC4DeletionLikely OncogenicLikely Loss-of-function4
147NF2DeletionLikely OncogenicLikely Loss-of-function4
148CIITADeletionLikely OncogenicLikely Loss-of-function4
149SOX17DeletionLikely OncogenicLikely Loss-of-function4
150MSH6DeletionLikely OncogenicLikely Loss-of-function4
151HNF1ADeletionLikely OncogenicLikely Loss-of-function4
152BRCA2DeletionOncogenicLoss-of-function4
153BCORDeletionOncogenicLoss-of-function4
154ATRXDeletionLikely OncogenicLikely Loss-of-function4
155DNMT3ADeletionOncogenicLoss-of-function4
156CDKN2BDeletionOncogenicLoss-of-function4
157PMS2DeletionOncogenicLoss-of-function4
158PARP1DeletionLikely OncogenicLoss-of-function4
159CDKN2CDeletionOncogenicLoss-of-function4
160RAD17DeletionLikely OncogenicLikely Loss-of-function4
161CD58DeletionLikely OncogenicLoss-of-function4
162EEDDeletionLikely OncogenicLikely Loss-of-function4
163TP53BP1DeletionLikely OncogenicLikely Loss-of-function4
164BRCA1DeletionLikely OncogenicLikely Loss-of-function4
165MED12DeletionLikely OncogenicLikely Loss-of-function4
166SMARCA4DeletionLikely OncogenicLikely Loss-of-function4
167CDKN2ADeletionOncogenicLoss-of-function4
168DNMT3BDeletionLikely OncogenicLoss-of-function4
169NPM1DeletionLikely OncogenicLikely Loss-of-function4
170SOX9DeletionOncogenicLoss-of-function4
171APCDeletionLikely OncogenicLikely Loss-of-function4
172BCL2L11DeletionOncogenicLikely Loss-of-function4
173CICDeletionLikely OncogenicLikely Loss-of-function4
174SHQ1DeletionLikely OncogenicLikely Loss-of-function4
175RBM10DeletionLikely OncogenicLikely Loss-of-function4
176AXIN1DeletionLikely OncogenicLikely Loss-of-function4
177FOXA1DeletionLikely OncogenicLikely Loss-of-function4
178PBRM1DeletionLikely OncogenicLikely Loss-of-function4
179EPHA3DeletionLikely OncogenicLikely Loss-of-function4
180VHLDeletionOncogenicLikely Loss-of-function4
181BCL10DeletionLikely OncogenicLikely Loss-of-function4
182KEAP1DeletionLikely OncogenicLikely Loss-of-function4
183CDC73DeletionOncogenicLoss-of-function4
184COP1DeletionLikely OncogenicLikely Loss-of-function4
185CASP8DeletionLikely OncogenicLikely Loss-of-function4
186PTENDeletionOncogenicLoss-of-function4
187SETD2DeletionOncogenicLoss-of-function4
188MGADeletionLikely OncogenicLikely Loss-of-function4
189STK11DeletionLikely OncogenicLikely Loss-of-function4
190ALDH2DeletionLikely OncogenicLikely Loss-of-function4
191TET2DeletionLikely OncogenicLikely Loss-of-function4
192GATA3DeletionLikely OncogenicLikely Loss-of-function4
193TP53DeletionLikely OncogenicLikely Loss-of-function4
194REV3LDeletionInconclusiveInconclusive4
195SDHBDeletionLikely OncogenicLoss-of-function4
196INPP4BDeletionLikely OncogenicLikely Loss-of-function4
197LATS1DeletionLikely OncogenicLikely Loss-of-function4
198TET1DeletionLikely OncogenicLikely Loss-of-function4
199RNASEH2BDeletionLikely OncogenicLikely Loss-of-function4
200PTPN11DeletionOncogenicLoss-of-function4
201SMARCB1DeletionLikely OncogenicLikely Loss-of-function4
202CREBBPDeletionLikely OncogenicLikely Loss-of-function4
203RAD21DeletionLikely OncogenicLikely Loss-of-function4
204LATS2DeletionOncogenicLoss-of-function4
205ASXL2DeletionLikely OncogenicLikely Loss-of-function4
206CDKN1ADeletionLikely OncogenicLikely Loss-of-function4
207KDM6ADeletionOncogenicLoss-of-function4
208SDHDDeletionLikely OncogenicLikely Loss-of-function4
209ARID1ADeletionLikely OncogenicLoss-of-function4
210FZR1DeletionLikely OncogenicLikely Loss-of-function4
211ASXL1DeletionLikely OncogenicLikely Loss-of-function4
212CDKN1BDeletionOncogenicLoss-of-function4
213TNFAIP3DeletionLikely OncogenicLikely Loss-of-function4
214ARID1BDeletionLikely OncogenicLikely Loss-of-function4
215IKZF1DeletionLikely OncogenicLoss-of-function4
216KMT2CDeletionLikely OncogenicLikely Loss-of-function4
217MAXDeletionLikely OncogenicLikely Loss-of-function4
218CBLDeletionLikely OncogenicLikely Loss-of-function4
219FHDeletionLikely OncogenicLoss-of-function4
220RB1DeletionLikely OncogenicLikely Loss-of-function4
221PPP2R2ADeletionLikely OncogenicLikely Loss-of-function4
222MTAPDeletionLikely OncogenicLikely Loss-of-function4
223SMAD4DeletionLikely OncogenicLoss-of-function4
224CDH1DeletionLikely OncogenicLikely Loss-of-function4
225BARD1DeletionLikely OncogenicLikely Loss-of-function4
226TSC2DeletionOncogenicLikely Loss-of-function4
227KMT2DDeletionLikely OncogenicLikely Loss-of-function4
228HTATIP2DeletionLikely OncogenicLikely Loss-of-function4
229RASA1DeletionLikely OncogenicLikely Loss-of-function4
230MEN1DeletionOncogenicLoss-of-function4
231PAX5DeletionLikely OncogenicLoss-of-function4
232BCL11BDeletionLikely OncogenicLoss-of-function4
233B2MDeletionLikely OncogenicLikely Loss-of-function4
234SMAD3DeletionLikely OncogenicLikely Loss-of-function4
235INTS6DeletionLikely OncogenicLikely Loss-of-function4
236CDK12DeletionLikely OncogenicLikely Loss-of-function4
237TSC1DeletionLikely OncogenicLikely Loss-of-function4
238BIRC3DeletionLikely OncogenicLikely Loss-of-function4
239RAD50DeletionLikely OncogenicLikely Loss-of-function4
240FAT1DeletionOncogenicLoss-of-function4
241SMAD2DeletionLikely OncogenicLoss-of-function4
242ANKRD11DeletionLikely OncogenicLoss-of-function4
243DICER1DeletionLikely OncogenicLikely Loss-of-function4
244SETD3OverexpressionLikely OncogenicLikely Gain-of-function1
245CRLF2OverexpressionOncogenicGain-of-function10
246FLT3AmplificationLikely OncogenicGain-of-function2
247PRDM1DeletionLikely OncogenicLikely Loss-of-function4
248TLE1DeletionLikely OncogenicLikely Loss-of-function2
249TLE4DeletionLikely OncogenicLikely Loss-of-function2
250CCND2AmplificationLikely OncogenicLikely Gain-of-function3
251FGFR3AmplificationLikely OncogenicLikely Gain-of-function.
252MMS22LDeletionLikely OncogenicLikely Loss-of-function.
253CHEK2DeletionLikely OncogenicLikely Loss-of-function.
254DPAGT1AmplificationLikely OncogenicLikely Gain-of-function1
255HGFAmplificationLikely OncogenicLikely Gain-of-function.
256NTRK2AmplificationLikely OncogenicLikely Gain-of-function
257NTRK3AmplificationLikely OncogenicLikely Gain-of-function
258CSF1RAmplificationLikely OncogenicLikely Gain-of-function1
259TLK2AmplificationLikely OncogenicLikely Gain-of-function1
260RIT1AmplificationLikely OncogenicLikely Gain-of-function3
261CRKLAmplificationLikely OncogenicLikely Gain-of-function2
262FLT3AmplificationLikely OncogenicLikely Gain-of-function.