43 lines
827 B
Plaintext
Executable File
43 lines
827 B
Plaintext
Executable File
# hereditary
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task run_hereditary {
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String name
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String output_dir
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String project
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String filter_txt
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command <<<
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if [ ! -d ${output_dir}/hereditary ];then
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mkdir ${output_dir}/hereditary
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fi
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hereditary.py -d $DATABASE/hereditary_database.xlsx -p ${project} -n ${name} -f ${filter_txt} -o ${output_dir}/hereditary
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>>>
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}
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workflow call_hereditary {
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Boolean run=true
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String name
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String output_dir
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String project
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String filter_txt
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if (run) {
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call run_hereditary {
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input:
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name=name,
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output_dir=output_dir,
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project=project,
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filter_txt=filter_txt
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}
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}
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output {
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String hereditary_txt = "${output_dir}/hereditary/${name}.hereditary.txt"
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}
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}
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