pipeline/wdl/chemo.wdl

task chemo {
    String name
    String output_dir
    String project
    String vcf
    command <<<

        if [ ! -d ${output_dir}/chemo ];then
        mkdir ${output_dir}/chemo
        fi
        chemo.py -p ${project} -n ${name} -v ${vcf} -o ${output_dir}/chemo
    >>>
}