digraph pipeline {
  #rankdir=LR;
  compound=true;

  # Links
  CALL_dealwithsnvindel -> CALL_hereditary
  CALL_mutation_calling -> CALL_neoantigen
  CALL_mmr -> CALL_auto_report
  CALL_statistics -> CALL_fusion
  CALL_alignment -> CALL_msi
  CALL_hereditary -> CALL_auto_report
  CALL_annovar -> CALL_dealwithsnvindel
  CALL_alignment -> CALL_fusion
  CALL_alignment -> CALL_hotspot
  CALL_alignment -> CALL_cnvkit
  CALL_alignment -> CALL_statistics
  CALL_hrr -> CALL_auto_report
  CALL_mutation_calling -> CALL_annovar
  CALL_alignment -> CALL_chemo
  CALL_tmb -> CALL_auto_report
  CALL_fusion -> CALL_auto_report
  CALL_dealwithsnvindel -> CALL_auto_report
  CALL_alignment -> CALL_mutation_calling
  CALL_hla -> CALL_neoantigen
  CALL_cnvkit -> CALL_auto_report
  CALL_alignment -> CALL_annovar
  CALL_annovar -> CALL_tmb
  CALL_dealwithsnvindel -> CALL_hrr
  CALL_dealwithsnvindel -> CALL_mmr
  CALL_alignment -> CALL_conpair
  CALL_qc -> CALL_alignment

  # Nodes
  CALL_alignment [label="call alignment";shape="oval";peripheries=2]
  CALL_auto_report [label="call auto_report"]
  CALL_statistics [label="call statistics";shape="oval";peripheries=2]
  CALL_hotspot [label="call hotspot"]
  CALL_hrr [label="call hrr"]
  CALL_mutation_calling [label="call mutation_calling"]
  CALL_dealwithsnvindel [label="call dealwithsnvindel"]
  CALL_mmr [label="call mmr"]
  CALL_cnvkit [label="call cnvkit"]
  CALL_msi [label="call msi"]
  CALL_fusion [label="call fusion"]
  CALL_neoantigen [label="call neoantigen"]
  CALL_tmb [label="call tmb"]
  CALL_create_dir [label="call create_dir"]
  CALL_hla [label="call hla"]
  CALL_qc [label="call qc";shape="oval";peripheries=2]
  CALL_chemo [label="call chemo"]
  CALL_hereditary [label="call hereditary"]
  CALL_conpair [label="call conpair"]
  CALL_annovar [label="call annovar"]
}