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bug

master
chaopower 2023-12-15 16:02:19 +08:00
parent daa2756ab8
commit c484fb1d1f
1 changed files with 1 additions and 0 deletions
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codes/qc_stat.py
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@ -52,6 +52,7 @@ with open(os.path.join(bamdst_out, 'coverage.report'), 'r') as file2:
out.write(''.join(["mean_depth(dedup)\t", str(bamdst["[Target] Average depth(rmdup)"]), "\n"]))
out.write(''.join(["coverage(>0x)\t", str(bamdst["[Target] Coverage (>0x)"].replace('%', '')), "\n"]))
out.write(''.join(["coverage(>10x)\t", str(bamdst["[Target] Coverage (>=10x)"].replace('%', '')), "\n"]))
out.write(''.join(["coverage(>30x)\t", str(bamdst["[Target] Coverage (>=30x)"].replace('%', '')), "\n"]))
uniformity = round((float(bamdst["[Target] Average depth"])) * 0.2)
b = os.popen("sed -n %s'p' %s | cut -f5" % (uniformity, os.path.join(bamdst_out, 'depth_distribution.plot')))