From ab17cb58dfe7e16390ac0654451e46f1ccefa3d0 Mon Sep 17 00:00:00 2001 From: chaopower Date: Tue, 2 Jan 2024 11:54:06 +0800 Subject: [PATCH] bug --- wdl/alignment.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wdl/alignment.wdl b/wdl/alignment.wdl index d53d89c..aa99d0f 100755 --- a/wdl/alignment.wdl +++ b/wdl/alignment.wdl @@ -203,6 +203,6 @@ workflow alignment { String normal_sorted_bam = "${output_dir}/alignment/${normal}.sorted.bam" String normal_rmdup_bam = "${output_dir}/alignment/${normal}.rmdup.bam" String normal_pileup = "${output_dir}/alignment/${normal}.pileup" - String genecore_json = "${output_dir}/alignment/${name}_gencore.json" + String genecore_json = "${output_dir}/alignment/${tumor}_gencore.json" } } \ No newline at end of file