diff --git a/wdl/alignment.wdl b/wdl/alignment.wdl index d53d89c..aa99d0f 100755 --- a/wdl/alignment.wdl +++ b/wdl/alignment.wdl @@ -203,6 +203,6 @@ workflow alignment { String normal_sorted_bam = "${output_dir}/alignment/${normal}.sorted.bam" String normal_rmdup_bam = "${output_dir}/alignment/${normal}.rmdup.bam" String normal_pileup = "${output_dir}/alignment/${normal}.pileup" - String genecore_json = "${output_dir}/alignment/${name}_gencore.json" + String genecore_json = "${output_dir}/alignment/${tumor}_gencore.json" } } \ No newline at end of file