diff --git a/pipeline.wdl b/pipeline.wdl index 35dcb84..1f4a79c 100644 --- a/pipeline.wdl +++ b/pipeline.wdl @@ -1,4 +1,3 @@ - import "./wdl/qc.wdl" import "./wdl/alignment.wdl" import "./wdl/call_mutation.wdl" @@ -8,10 +7,10 @@ import "./wdl/cnv.wdl" import "./wdl/msi.wdl" import "./wdl/chemo.wdl" import "./wdl/hereditary.wdl" +import "./wdl/pollution.wdl" import "./wdl/tmb.wdl" import "./wdl/postprocess.wdl" - workflow pipeline { String tumor