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pollution

master
chaopower 2023-12-01 09:10:50 +08:00
parent eca9df16d6
commit 8712b6dea3
1 changed files with 1 additions and 1 deletions
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2
script/pollution.py
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@ -261,7 +261,7 @@ if __name__ == '__main__':
parser.add_argument('-b', '--ref_bed', help="ref_bed", required=True) parser.add_argument('-b', '--ref_bed', help="ref_bed", required=True)
parser.add_argument('-v', '--vcf', help="raw vcf for prbe 160 or 17 ; somatic vcf for prbe 682 or 624", parser.add_argument('-v', '--vcf', help="raw vcf for prbe 160 or 17 ; somatic vcf for prbe 682 or 624",
required=True) required=True)
parser.add_argument('-v2', '--vcf2', help="germline vcf; required when prbe 682 or 624") parser.add_argument('-v2', '--vcf2', help="germline vcf; required when prbe 682 or 624", default='', required=False, nargs='?')
parser.add_argument('-c', '--cnvkit_bed', help="cnvkit_bed; required when prbe 682 or 624") parser.add_argument('-c', '--cnvkit_bed', help="cnvkit_bed; required when prbe 682 or 624")
parser.add_argument('-p', '--probe', help="probe, 682, 624, 160, 17 for now ", required=True) parser.add_argument('-p', '--probe', help="probe, 682, 624, 160, 17 for now ", required=True)
parser.add_argument('-o', '--output_dir', help="Output directory, default ./", default='') parser.add_argument('-o', '--output_dir', help="Output directory, default ./", default='')