diff --git a/.gitignore b/.gitignore index 80bf281..b8ac158 100644 --- a/.gitignore +++ b/.gitignore @@ -197,5 +197,6 @@ cython_debug/ # option (not recommended) you can uncomment the following to ignore the entire idea folder. #.idea/ -software/ +software +other diff --git a/script/InsertAndDepthStat.R b/codes/InsertAndDepthStat.R similarity index 100% rename from script/InsertAndDepthStat.R rename to codes/InsertAndDepthStat.R diff --git a/script/bam_fetch.py b/codes/bam_fetch.py similarity index 100% rename from script/bam_fetch.py rename to codes/bam_fetch.py diff --git a/script/chemo.py b/codes/chemo.py similarity index 100% rename from script/chemo.py rename to codes/chemo.py diff --git a/script/correct_genome_3rule.py b/codes/correct_genome_3rule.py similarity index 100% rename from script/correct_genome_3rule.py rename to codes/correct_genome_3rule.py diff --git a/script/correct_umi_1r_plus_2r.pl b/codes/correct_umi_1r_plus_2r.pl similarity index 100% rename from script/correct_umi_1r_plus_2r.pl rename to codes/correct_umi_1r_plus_2r.pl diff --git a/script/correct_umi_overlap_reads.py b/codes/correct_umi_overlap_reads.py similarity index 100% rename from script/correct_umi_overlap_reads.py rename to codes/correct_umi_overlap_reads.py diff --git a/script/correct_umi_subnormal.pl b/codes/correct_umi_subnormal.pl similarity index 100% rename from script/correct_umi_subnormal.pl rename to codes/correct_umi_subnormal.pl diff --git a/script/cromwell.examples.conf b/codes/cromwell.examples.conf similarity index 100% rename from script/cromwell.examples.conf rename to codes/cromwell.examples.conf diff --git a/script/drug_dedup.py b/codes/drug_dedup.py similarity index 100% rename from script/drug_dedup.py rename to codes/drug_dedup.py diff --git a/script/filter_cnv.pl b/codes/filter_cnv.pl similarity index 100% rename from script/filter_cnv.pl rename to codes/filter_cnv.pl diff --git a/script/filter_fusion.pl b/codes/filter_fusion.pl similarity index 100% rename from script/filter_fusion.pl rename to codes/filter_fusion.pl diff --git a/script/filter_longindel.pl b/codes/filter_longindel.pl similarity index 100% rename from script/filter_longindel.pl rename to codes/filter_longindel.pl diff --git a/script/filter_promoter.pl b/codes/filter_promoter.pl similarity index 100% rename from script/filter_promoter.pl rename to codes/filter_promoter.pl diff --git a/script/filter_snpindel.pl b/codes/filter_snpindel.pl similarity index 100% rename from script/filter_snpindel.pl rename to codes/filter_snpindel.pl diff --git a/script/hereditary.py b/codes/hereditary.py similarity index 100% rename from script/hereditary.py rename to codes/hereditary.py diff --git a/script/indication.pl b/codes/indication.pl similarity index 100% rename from script/indication.pl rename to codes/indication.pl diff --git a/script/pollution.py b/codes/pollution.py similarity index 100% rename from script/pollution.py rename to codes/pollution.py diff --git a/script/postprocess.py b/codes/postprocess.py similarity index 100% rename from script/postprocess.py rename to codes/postprocess.py diff --git a/script/public/bed/160.bed b/codes/public/bed/160.bed similarity index 100% rename from script/public/bed/160.bed rename to codes/public/bed/160.bed diff --git a/script/public/bed/17.bed b/codes/public/bed/17.bed similarity index 100% rename from script/public/bed/17.bed rename to codes/public/bed/17.bed diff --git a/script/public/bed/624.bed b/codes/public/bed/624.bed similarity index 100% rename from script/public/bed/624.bed rename to codes/public/bed/624.bed diff --git a/script/public/bed/650.bed b/codes/public/bed/650.bed similarity index 100% rename from script/public/bed/650.bed rename to codes/public/bed/650.bed diff --git a/script/public/bed/lung17gene.hg19.liftover.bed b/codes/public/bed/lung17gene.hg19.liftover.bed similarity index 100% rename from script/public/bed/lung17gene.hg19.liftover.bed rename to codes/public/bed/lung17gene.hg19.liftover.bed diff --git a/script/public/blacklist.txt b/codes/public/blacklist.txt similarity index 100% rename from script/public/blacklist.txt rename to codes/public/blacklist.txt diff --git a/script/public/chemo_database.xlsx b/codes/public/chemo_database.xlsx similarity index 100% rename from script/public/chemo_database.xlsx rename to codes/public/chemo_database.xlsx diff --git a/script/public/cnvkit/160gene_pool_normal_reference.cnn b/codes/public/cnvkit/160gene_pool_normal_reference.cnn similarity index 100% rename from script/public/cnvkit/160gene_pool_normal_reference.cnn rename to codes/public/cnvkit/160gene_pool_normal_reference.cnn diff --git a/script/public/cnvkit/17gene_pool_normal_reference.cnn b/codes/public/cnvkit/17gene_pool_normal_reference.cnn similarity index 100% rename from script/public/cnvkit/17gene_pool_normal_reference.cnn rename to codes/public/cnvkit/17gene_pool_normal_reference.cnn diff --git a/script/public/cnvkit/access-5k-mappable.hg19.bed b/codes/public/cnvkit/access-5k-mappable.hg19.bed similarity index 100% rename from script/public/cnvkit/access-5k-mappable.hg19.bed rename to codes/public/cnvkit/access-5k-mappable.hg19.bed diff --git a/script/public/cnvkit/refFlat.txt b/codes/public/cnvkit/refFlat.txt similarity index 100% rename from script/public/cnvkit/refFlat.txt rename to codes/public/cnvkit/refFlat.txt diff --git a/script/public/gene_strand.txt b/codes/public/gene_strand.txt similarity index 100% rename from script/public/gene_strand.txt rename to codes/public/gene_strand.txt diff --git a/script/public/hereditary_database.xlsx b/codes/public/hereditary_database.xlsx similarity index 100% rename from script/public/hereditary_database.xlsx rename to codes/public/hereditary_database.xlsx diff --git a/script/public/hg19_refGene.txt b/codes/public/hg19_refGene.txt similarity index 100% rename from script/public/hg19_refGene.txt rename to codes/public/hg19_refGene.txt diff --git a/script/public/hotspot/hotspot-info.xlsx b/codes/public/hotspot/hotspot-info.xlsx similarity index 100% rename from script/public/hotspot/hotspot-info.xlsx rename to codes/public/hotspot/hotspot-info.xlsx diff --git a/script/public/hotspot/hotspot.py b/codes/public/hotspot/hotspot.py similarity index 100% rename from script/public/hotspot/hotspot.py rename to codes/public/hotspot/hotspot.py diff --git a/script/public/hotspot/hotspot_delins.bed b/codes/public/hotspot/hotspot_delins.bed similarity index 100% rename from script/public/hotspot/hotspot_delins.bed rename to codes/public/hotspot/hotspot_delins.bed diff --git a/script/public/hotspot/hotspot_snv.txt b/codes/public/hotspot/hotspot_snv.txt similarity index 100% rename from script/public/hotspot/hotspot_snv.txt rename to codes/public/hotspot/hotspot_snv.txt diff --git a/script/public/hotspot/hotspot_snv.vcf b/codes/public/hotspot/hotspot_snv.vcf similarity index 100% rename from script/public/hotspot/hotspot_snv.vcf rename to codes/public/hotspot/hotspot_snv.vcf diff --git a/script/public/noise/160.cfdna.back.txt b/codes/public/noise/160.cfdna.back.txt similarity index 100% rename from script/public/noise/160.cfdna.back.txt rename to codes/public/noise/160.cfdna.back.txt diff --git a/script/public/noise/160.tissue.back.txt b/codes/public/noise/160.tissue.back.txt similarity index 100% rename from script/public/noise/160.tissue.back.txt rename to codes/public/noise/160.tissue.back.txt diff --git a/script/public/noise/17.cfdna.back.txt b/codes/public/noise/17.cfdna.back.txt similarity index 100% rename from script/public/noise/17.cfdna.back.txt rename to codes/public/noise/17.cfdna.back.txt diff --git a/script/public/noise/17.tissue.back.txt b/codes/public/noise/17.tissue.back.txt similarity index 100% rename from script/public/noise/17.tissue.back.txt rename to codes/public/noise/17.tissue.back.txt diff --git a/script/public/noise/624.cfdna.back.txt b/codes/public/noise/624.cfdna.back.txt similarity index 100% rename from script/public/noise/624.cfdna.back.txt rename to codes/public/noise/624.cfdna.back.txt diff --git a/script/public/noise/682.tissue.back.txt b/codes/public/noise/682.tissue.back.txt similarity index 100% rename from script/public/noise/682.tissue.back.txt rename to codes/public/noise/682.tissue.back.txt diff --git a/script/public/pollution/160_contaminate_ref.bed b/codes/public/pollution/160_contaminate_ref.bed similarity index 100% rename from script/public/pollution/160_contaminate_ref.bed rename to codes/public/pollution/160_contaminate_ref.bed diff --git a/script/public/pollution/17_contaminate_ref.bed b/codes/public/pollution/17_contaminate_ref.bed similarity index 100% rename from script/public/pollution/17_contaminate_ref.bed rename to codes/public/pollution/17_contaminate_ref.bed diff --git a/script/public/pollution/624_contaminate_cnvkit.bed b/codes/public/pollution/624_contaminate_cnvkit.bed similarity index 100% rename from script/public/pollution/624_contaminate_cnvkit.bed rename to codes/public/pollution/624_contaminate_cnvkit.bed diff --git a/script/public/pollution/624_contaminate_ref.bed b/codes/public/pollution/624_contaminate_ref.bed similarity index 100% rename from script/public/pollution/624_contaminate_ref.bed rename to codes/public/pollution/624_contaminate_ref.bed diff --git a/script/public/pollution/682_contaminate_cnvkit.bed b/codes/public/pollution/682_contaminate_cnvkit.bed similarity index 100% rename from script/public/pollution/682_contaminate_cnvkit.bed rename to codes/public/pollution/682_contaminate_cnvkit.bed diff --git a/script/public/pollution/682_contaminate_ref.bed b/codes/public/pollution/682_contaminate_ref.bed similarity index 100% rename from script/public/pollution/682_contaminate_ref.bed rename to codes/public/pollution/682_contaminate_ref.bed diff --git a/script/public/pollution/contaminate_650.bed b/codes/public/pollution/contaminate_650.bed similarity index 100% rename from script/public/pollution/contaminate_650.bed rename to codes/public/pollution/contaminate_650.bed diff --git a/script/qc_stat.py b/codes/qc_stat.py similarity index 100% rename from script/qc_stat.py rename to codes/qc_stat.py diff --git a/script/run_pipeline.py b/codes/run_pipeline.py similarity index 100% rename from script/run_pipeline.py rename to codes/run_pipeline.py diff --git a/script/run_wdl.py b/codes/run_wdl.py similarity index 100% rename from script/run_wdl.py rename to codes/run_wdl.py diff --git a/script/sample_post.py b/codes/sample_post.py similarity index 100% rename from script/sample_post.py rename to codes/sample_post.py diff --git a/script/soft_bash b/codes/soft_bash similarity index 100% rename from script/soft_bash rename to codes/soft_bash diff --git a/script/target_therapy_cnv.pl b/codes/target_therapy_cnv.pl similarity index 100% rename from script/target_therapy_cnv.pl rename to codes/target_therapy_cnv.pl diff --git a/script/target_therapy_fusion.pl b/codes/target_therapy_fusion.pl similarity index 100% rename from script/target_therapy_fusion.pl rename to codes/target_therapy_fusion.pl diff --git a/script/target_therapy_longindel.pl b/codes/target_therapy_longindel.pl similarity index 100% rename from script/target_therapy_longindel.pl rename to codes/target_therapy_longindel.pl diff --git a/script/target_therapy_snpindel.pl b/codes/target_therapy_snpindel.pl similarity index 100% rename from script/target_therapy_snpindel.pl rename to codes/target_therapy_snpindel.pl diff --git a/script/vcf_add_tag_msi.pl b/codes/vcf_add_tag_msi.pl similarity index 100% rename from script/vcf_add_tag_msi.pl rename to codes/vcf_add_tag_msi.pl diff --git a/script/vcf_add_tag_mutalt.py b/codes/vcf_add_tag_mutalt.py similarity index 100% rename from script/vcf_add_tag_mutalt.py rename to codes/vcf_add_tag_mutalt.py diff --git a/script/vcf_filter.py b/codes/vcf_filter.py similarity index 100% rename from script/vcf_filter.py rename to codes/vcf_filter.py diff --git a/script/vcf_operations.py b/codes/vcf_operations.py similarity index 100% rename from script/vcf_operations.py rename to codes/vcf_operations.py diff --git a/database/info.csv b/database/info.csv index 18836a1..9bdf36c 100755 --- a/database/info.csv +++ b/database/info.csv @@ -19,8 +19,8 @@ LZ168,Ovarian_87_gene,卵巢癌87基因检测（组织版）,卵巢癌87基因 LZ169,Ovarian_87_gene,卵巢癌87基因检测（血液版）,卵巢癌87基因检测报告（血液版）,addTarget;addFusion;addCnv;addMmr;addChemo;addHcs,ST01,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/CCND1/HRAS/MAP2K1/ARID1A/CTNNB1/ERBB4/MDM2/MSH2/MSH6/PMS2/EPCAM,MET,NA,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1/MDM2/CCND1,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3/CYP19A1/CYP2D6,BRCA1/BRCA2/EPCAM/MLH1/MSH2/MSH6/PMS2,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA LZ170,Cervical_84_gene,宫颈癌84基因检测（组织版）,宫颈癌84基因检测报告（组织版）,addTarget;addFusion;addCnv;addMsi;addMmr;addChemo,ST12,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/FBXW7/ARID1A/STK11/NOTCH1/MSH2/MSH6/PMS2/EPCAM,MET,NA,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3/CYP19A1/CYP2D6,NA,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA LZ171,Cervical_84_gene,宫颈癌84基因检测（血液版）,宫颈癌84基因检测报告（血液版）,addTarget;addFusion;addCnv;addMmr;addChemo,ST12,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/FBXW7/ARID1A/STK11/NOTCH1/MSH2/MSH6/PMS2/EPCAM,MET,NA,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3/CYP19A1/CYP2D6,NA,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA -LZ172,Uterine_84_gene,子宫内膜癌84基因检测（组织版）,子宫内膜癌84基因检测报告（组织版）,addTarget;addFusion;addCnv;addMsi;addMmr;addChemo;addHcs,ST23,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/CTNNB1/ARID1A/POLE/FBXW7/MSH2/MSH6/PMS2/EPCAM,MET,NA,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3/CYP19A1/CYP2D6,EPCAM/MLH1/MSH2/MSH6/PMS2,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA -LZ173,Uterine_84_gene,子宫内膜癌84基因检测（血液版）,子宫内膜癌84基因检测报告（血液版）,addTarget;addFusion;addCnv;addMmr;addChemo;addHcs,ST23,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/CTNNB1/ARID1A/POLE/FBXW7/MSH2/MSH6/PMS2/EPCAM,MET,NA,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3/CYP19A1/CYP2D6,EPCAM/MLH1/MSH2/MSH6/PMS2,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA +LZ172,Uterine_84_gene,子宫内膜癌84基因检测（组织版）,子宫内膜癌84基因检测报告（组织版）,addTarget;addFusion;addCnv;addMsi;addMmr;addChemo;addHcs;addMtec,ST23,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/CTNNB1/ARID1A/POLE/FBXW7/MSH2/MSH6/PMS2/EPCAM,MET,NA,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3/CYP19A1/CYP2D6,EPCAM/MLH1/MSH2/MSH6/PMS2,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA +LZ173,Uterine_84_gene,子宫内膜癌84基因检测（血液版）,子宫内膜癌84基因检测报告（血液版）,addTarget;addFusion;addCnv;addMmr;addChemo;addHcs;addMtec,ST23,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/CTNNB1/ARID1A/POLE/FBXW7/MSH2/MSH6/PMS2/EPCAM,MET,NA,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3/CYP19A1/CYP2D6,EPCAM/MLH1/MSH2/MSH6/PMS2,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA LZ174,Liver_83_gene,肝癌83基因检测（组织版）,肝癌83基因检测报告（组织版）,addTarget;addFusion;addCnv;addMsi;addMmr;addChemo,ST26,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/CTNNB1/ERBB4/TERT/ARID1A/JAK1/MSH2/MSH6/PMS2/EPCAM,MET,TERT,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3,NA,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA LZ175,Liver_83_gene,肝癌83基因检测（血液版）,肝癌83基因检测报告（血液版）,addTarget;addFusion;addCnv;addMmr;addChemo,ST26,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/CTNNB1/ERBB4/TERT/ARID1A/JAK1/MSH2/MSH6/PMS2/EPCAM,MET,TERT,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3,NA,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA LZ176,Biliary_84_gene,胆系肿瘤84基因检测（组织版）,胆道癌84基因检测报告（组织版）,addTarget;addFusion;addCnv;addMsi;addMmr;addChemo,ST06,160,AKT1/ALK/ATM/ATR/BARD1/BRAF/BRCA1/BRCA2/BRIP1/CCND2/CCND3/CDK12/CDK4/CDKN2A/CHEK1/CHEK2/CSF1R/EGFR/ERBB2/FANCA/FANCL/FGFR1/FGFR2/FGFR3/IDH1/KIT/KRAS/MET/MLH1/MTOR/NBN/NF1/NRAS/NTRK1/NTRK2/NTRK3/PALB2/PDGFRA/PIK3CA/PTEN/RAD51B/RAD51C/RAD51D/RAD54L/RB1/RET/ROS1/SDHA/SDHB/SDHC/SDHD/SMO/TP53/TSC1/TSC2/MDM2/ARID1A/SMAD4/CTNNB1/APC/FBXW7/MSH2/MSH6/PMS2/EPCAM,MET,NA,ALK/CCND2/CCND3/CDK4/CDKN2A/CSF1R/EGFR/ERBB2/FGFR1/FGFR2/FGFR3/MET/RB1/MDM2,ALK/NTRK1/NTRK2/NTRK3/RET/ROS1,NA,ABCB1/CASP7/CDA/CYP2C8/CYP3A4/DPYD/DYNC2H1/ERCC1/ERCC2/GSTP1/MTHFR/NQO1/SOD2/TPMT/TYMS/UGT1A1/XRCC1/XPC/HAS3,NA,MSH2/MSH6/MLH1/PMS2/EPCAM,NA,NA,NA