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bug

master
chaopower 2024-01-09 15:52:27 +08:00
parent 2bc4136bb0
commit 39ba3fdaab
1 changed files with 3 additions and 3 deletions
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6
wdl/alignment.wdl
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@ -170,7 +170,7 @@ workflow alignment {
name=normal, name=normal,
ref=ref, ref=ref,
output_dir=output_dir, output_dir=output_dir,
sorted_bam=bwa_tumor_control.sorted_bam, sorted_bam=bwa_normal_control.sorted_bam,
} }
if (umi) { if (umi) {
@ -179,7 +179,7 @@ workflow alignment {
name=tumor, name=tumor,
ref=ref, ref=ref,
output_dir=output_dir, output_dir=output_dir,
sorted_bam=bwa_normal_control.sorted_bam, sorted_bam=bwa_tumor_control.sorted_bam,
} }
} }
@ -189,7 +189,7 @@ workflow alignment {
name=tumor, name=tumor,
ref=ref, ref=ref,
output_dir=output_dir, output_dir=output_dir,
sorted_bam=bwa_normal_control.sorted_bam, sorted_bam=bwa_tumor_control.sorted_bam,
} }
} }
} }