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过滤条件调整

master
chaopower 2024-01-09 13:09:09 +08:00
parent 3fdddf60c7
commit 2bc4136bb0
1 changed files with 9 additions and 1 deletions
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10
codes/filter_snpindel.pl
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@ -59,7 +59,15 @@ while (<IN>) {
my $gene = (split(";", $line[6]))[0];
if ($pipeline eq 'germline') {
$freq = (split(";", $line[-1]))[6];
# GT:DP:VD:AD:AF:RD:ALD
# GT:DP:VD:ALD:RD:AD:AF:BIAS:PMEAN:PSTD:QUAL:QSTD:SBF:ODDRATIO:MQ:SN:HIAF:ADJAF:NM
# 信息提取
my @content_name = split(/:/, $line[103]);
my @content = split(/:/, $line[-1]);
# 将数据与表头对应
my %record_content;
@record_content{@content_name} = @content;
$freq = $record_content{'AF'};
}
my @reason;