From 257aa555a4ad39f6bc3cc30e225c83f13f16de67 Mon Sep 17 00:00:00 2001
From: chaopower <chao.zhang@jmdna.com>
Date: Thu, 30 Nov 2023 17:00:38 +0800
Subject: [PATCH] =?UTF-8?q?=E6=B7=BB=E5=8A=A0polltion?=
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---
 wdl/call_mutation.wdl | 1 +
 1 file changed, 1 insertion(+)

diff --git a/wdl/call_mutation.wdl b/wdl/call_mutation.wdl
index 31a8dd5..8a73971 100755
--- a/wdl/call_mutation.wdl
+++ b/wdl/call_mutation.wdl
@@ -790,6 +790,7 @@ workflow call_mutation {
     }
 
     output {
+        String raw_vcf = "${output_dir}/mutation/${tumor}.raw.snp_indel.vcf"
         String somatic_vcf = "${output_dir}/mutation/${tumor}.snp_indel.somatic.vcf"
         String germline_vcf = "${output_dir}/mutation/${tumor}.snp_indel.germline.vcf"
         String hotspot_vcf = "${output_dir}/mutation/${tumor}.hotspot.vcf"