diff --git a/wdl/call_mutation.wdl b/wdl/call_mutation.wdl index 31a8dd5..8a73971 100755 --- a/wdl/call_mutation.wdl +++ b/wdl/call_mutation.wdl @@ -790,6 +790,7 @@ workflow call_mutation { } output { + String raw_vcf = "${output_dir}/mutation/${tumor}.raw.snp_indel.vcf" String somatic_vcf = "${output_dir}/mutation/${tumor}.snp_indel.somatic.vcf" String germline_vcf = "${output_dir}/mutation/${tumor}.snp_indel.germline.vcf" String hotspot_vcf = "${output_dir}/mutation/${tumor}.hotspot.vcf"