diff --git a/wdl/alignment.wdl b/wdl/alignment.wdl index 2947779..23888eb 100755 --- a/wdl/alignment.wdl +++ b/wdl/alignment.wdl @@ -174,7 +174,7 @@ workflow alignment { } if (umi) { - call markduplicates_genecore as tumor_markduplicates_genecore { + call markduplicates_genecore as tumor_markduplicates_genecore_control { input: name=tumor, ref=ref, @@ -184,7 +184,7 @@ workflow alignment { } if (!umi) { - call markduplicates_picard as tumor_markduplicates_picard { + call markduplicates_picard as tumor_markduplicates_picard_control { input: name=tumor, ref=ref,