bug

2024-01-03 17:04:22 +08:00 · 2024-01-03 17:04:22 +08:00 · 1b53f9d6a0
parent 2d4b2ad7a2
commit 1b53f9d6a0
2 changed files with 5 additions and 5 deletions
--- a/database/info.csv
+++ b/database/info.csv
--- a/wdl/msi.wdl
+++ b/wdl/msi.wdl
@ -35,7 +35,7 @@ task run_msi {
        echo "msi 160 探针 "
        msisensor2 msi \
        -M /dataseq/jmdna/software/msisensor2/models_hg19_GRCh37 \
-        -t -e $PUBLIC/msi/624_650_160_intersect_74.bed \
+        -t ${tumor_rmdup_bam} -e $PUBLIC/msi/624_650_160_intersect_74.bed \
        -b 10 ${output_dir}/msi/${name}.msi.txt

        else