2023-08-25 10:06:31 +08:00
|
|
|
# pipeline
|
|
|
|
|
|
|
|
|
|
## run script example
|
|
|
|
|
```bash
|
2023-09-27 10:47:03 +08:00
|
|
|
export PATH=/dataseq/product/workflow/software/bin:$PATH
|
|
|
|
|
|
|
|
|
|
java17 -Dconfig.file=/home/zhangchao/project/pipeline/wdl/cromwell.examples.conf \
|
|
|
|
|
-jar /dataseq/product/workflow/software/cromwell-85.jar run \
|
2023-08-29 10:42:42 +08:00
|
|
|
--inputs /home/zhangchao/project/pipeline/workflow/test/20230814.json \
|
|
|
|
|
/home/zhangchao/project/pipeline/workflow/pipeline.wdl
|
|
|
|
|
```
|
|
|
|
|
|
|
|
|
|
## dot
|
|
|
|
|
```bash
|
|
|
|
|
womtool graph pipeline.wdl > other/pipeline.dot
|
|
|
|
|
```
|
|
|
|
|
|
2023-08-29 17:46:31 +08:00
|
|
|

|