2023-08-25 10:06:31 +08:00
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digraph pipeline {
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#rankdir=LR;
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compound=true;
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# Links
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2023-08-29 17:46:31 +08:00
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CALL_dealwithsnvindel -> CALL_hereditary
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2023-08-29 10:42:42 +08:00
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CALL_mutation_calling -> CALL_neoantigen
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2023-08-29 17:46:31 +08:00
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CALL_mmr -> CALL_auto_report
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2023-08-29 10:42:42 +08:00
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CALL_statistics -> CALL_fusion
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2023-08-25 10:06:31 +08:00
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CALL_alignment -> CALL_msi
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2023-08-29 17:46:31 +08:00
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CALL_hereditary -> CALL_auto_report
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CALL_annovar -> CALL_dealwithsnvindel
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2023-08-25 10:06:31 +08:00
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CALL_alignment -> CALL_fusion
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2023-08-29 17:46:31 +08:00
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CALL_alignment -> CALL_hotspot
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2023-08-25 10:06:31 +08:00
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CALL_alignment -> CALL_cnvkit
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2023-08-29 10:42:42 +08:00
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CALL_alignment -> CALL_statistics
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2023-08-29 17:46:31 +08:00
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CALL_hrr -> CALL_auto_report
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2023-08-25 10:06:31 +08:00
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CALL_mutation_calling -> CALL_annovar
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CALL_alignment -> CALL_chemo
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2023-08-29 17:46:31 +08:00
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CALL_tmb -> CALL_auto_report
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CALL_fusion -> CALL_auto_report
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CALL_dealwithsnvindel -> CALL_auto_report
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CALL_alignment -> CALL_mutation_calling
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2023-08-25 10:06:31 +08:00
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CALL_hla -> CALL_neoantigen
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2023-08-29 17:46:31 +08:00
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CALL_cnvkit -> CALL_auto_report
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2023-08-25 10:06:31 +08:00
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CALL_alignment -> CALL_annovar
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CALL_annovar -> CALL_tmb
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2023-08-29 17:46:31 +08:00
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CALL_dealwithsnvindel -> CALL_hrr
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CALL_dealwithsnvindel -> CALL_mmr
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CALL_alignment -> CALL_conpair
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CALL_qc -> CALL_alignment
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2023-08-25 10:06:31 +08:00
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# Nodes
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CALL_alignment [label="call alignment";shape="oval";peripheries=2]
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2023-08-29 17:46:31 +08:00
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CALL_auto_report [label="call auto_report"]
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2023-08-29 10:42:42 +08:00
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CALL_statistics [label="call statistics";shape="oval";peripheries=2]
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2023-08-29 17:46:31 +08:00
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CALL_hotspot [label="call hotspot"]
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CALL_hrr [label="call hrr"]
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2023-08-25 10:06:31 +08:00
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CALL_mutation_calling [label="call mutation_calling"]
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2023-08-29 17:46:31 +08:00
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CALL_dealwithsnvindel [label="call dealwithsnvindel"]
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CALL_mmr [label="call mmr"]
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2023-08-25 10:06:31 +08:00
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CALL_cnvkit [label="call cnvkit"]
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CALL_msi [label="call msi"]
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CALL_fusion [label="call fusion"]
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CALL_neoantigen [label="call neoantigen"]
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CALL_tmb [label="call tmb"]
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CALL_create_dir [label="call create_dir"]
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CALL_hla [label="call hla"]
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CALL_qc [label="call qc";shape="oval";peripheries=2]
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CALL_chemo [label="call chemo"]
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2023-08-29 17:46:31 +08:00
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CALL_hereditary [label="call hereditary"]
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CALL_conpair [label="call conpair"]
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CALL_annovar [label="call annovar"]
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2023-08-25 10:06:31 +08:00
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}
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