26 lines
512 B
Markdown
26 lines
512 B
Markdown
|
# 160 pick_variant
|
||
|
|
|
||
|
|
1. Func.refGene 包含 ~/exonic/ 不包含 ~/ncRNA/
|
||
|
|
|
||
|
|
2. ExonicFunc.refGene 不等于 "synonymous SNV" "unknown"
|
||
|
|
|
||
|
|
3. 1000g2015aug_all 1000g2015aug_eas esp6500siv2_all ExAC_nontcga_ALL ExAC_nontcga_EAS gnomAD_genome_ALL gnomAD_genome_EAS < 0.01
|
||
|
|
|
||
|
|
4. Otherinfo10 eq 'PASS'
|
||
|
|
|
||
|
|
5. ```
|
||
|
|
($line[$#line]!~/STR/ or (length($line[3])>=4 or length($line[4])>=4) or
|
||
|
|
$FREQ>5)
|
||
|
|
```
|
||
|
|
|
||
|
|
最后一列没有STR
|
||
|
|
|
||
|
|
Ref Alt 长度大于4 频率大于5%
|
||
|
|
|
||
|
|
# 17
|
||
|
|
|
||
|
|
1.
|
||
|
|
|
||
|
|
|
||
|
|
|